PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta008026
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family HD-ZIP
Protein Properties Length: 317aa    MW: 35602.4 Da    PI: 7.6154
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-52171PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-18170224256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ +++keq   Lee F ++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  Pta008026 170 RKKLRLSKEQSALLEESFLEHSTLNPKQKNALAKELNLQPRQVEVWFQNRRARTK 224
                778899***********************************************98 PP

2HD-ZIP_I/II125.42.5e-40170260192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq++lLEesF e+++L+p++K++la+eL+lqprqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
    Pta008026 170 RKKLRLSKEQSALLEESFLEHSTLNPKQKNALAKELNLQPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 260
                  69*************************************************************************************9.555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.957166226IPR001356Homeobox domain
SMARTSM003892.3E-16168230IPR001356Homeobox domain
SuperFamilySSF466894.49E-18169234IPR009057Homeodomain-like
CDDcd000861.05E-15170227No hitNo description
Gene3DG3DSA:1.10.10.601.6E-17170224IPR009057Homeodomain-like
PfamPF000462.1E-15170224IPR001356Homeobox domain
PROSITE patternPS000270201224IPR017970Homeobox, conserved site
PfamPF021831.4E-11226260IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.8E-21226269IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEEAKNKQRG LERLKTLASD DMTGLALGVG LSMAMPEIAR HGDDQKSAPL QLEPLTFRPI  60
ATAARAETAP APSAPFLWFM SKNCREEVTV AESNVSGIVR GGGIDMNRVP ATNESEYSSV  120
FQADALRTID TGSVVVKRER ERTFELEAER DRTCDVSSRT SDEEEIGSTR KKLRLSKEQS  180
ALLEESFLEH STLNPKQKNA LAKELNLQPR QVEVWFQNRR ARTKLKQTEV DCEVLKRCCE  240
NLTEENRRLQ KELQELRALK AVPPQCVIGQ DNYYMPLPAT TLTMCPSCER VATMENSRNL  300
SFSKSRISQF AQKSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174TRKKLRL
2218226RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.163620.0root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001758141.12e-80predicted protein
TrEMBLA9NX560.0A9NX56_PICSI; Putative uncharacterized protein
STRINGPP1S31_269V6.19e-96(Physcomitrella patens)